It helps to have a common vocabulary. “Glossary” isn’t quite the right word for this list since many of these are ideas or phrases instead of single words, and “encyclopedia” is far too grand. Anyway, I hope this list is helpful. More will be added with time.
Abiogenesis
Ad Hominem Fallacy
Angel of Mons
Apologetics
Argument from Authority
Atheist’s Wager
Beg the Question
Bronze Age Collapse
Burqa
Burden of Proof
Caltrop Argument
CE, BCE
Circular Reasoning
Confirmation Bias
Cottingley Fairies
Criterion of Embarrassment
Criterion of Multiple Attestation
Deepity
Doctrine
Dogma
Dunning-Kruger Effect
Extraordinary Claims Require Extraordinary Evidence
Fable
Fairy Tale
False Negative
False Positive
Folklore
Genetic Fallacy
Haggard’s Law
Hijab
Hoare’s Dictum
Hyperactive Agency Detection
Irreducible Complexity
Law, Scientific
Legend
Myth
Niqab
Opiate of the Masses
Panspermia
Pareidolia
Poe’s Law
Principle of Analogy
Public Square
Russell’s Teapot
Shibboleth
Shermer’s Law
Survival of the Fittest
Systems
Textus Receptus
Theory, Scientific
Wicked vs. Tame Problems
Word Hygiene